bambu v2.0.4 (Change date: 2022-02-08)
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Minor fixes: 
    * Fix out of bounds aligned reads bug
    * Fix bsgenome strand bug
    * Make error clear when in the de novo mode and threshold is too low
    * Move NDR out of discovery parameters list
    

bambu v2.0.3 (Change date: 2022-01-30)
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Minor fixes: 
    * Skip the errors when txScore is not calculated

bambu v2.0.1 (Change date: 2022-11-23)
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Minor fixes: 
    * Update saved objects using updated Bioc 3.14 packages 

bambu v2.0.0 (Change date: 2021-10-18)
=============
Major Changes:
    * Implemented a machine learning model to estimate transcript-level novel discovery rate
    * Implemented full length estimates, partial length estimates and unique read counts in final output
    * Improved the performance for the extend-annotations module with simplified code
    * Improved the performance when large amounts of annotations are missing.
    * Implemented a lowMemory option to reduce the memory requirements for very large samples (>100 million reads)

Minor fixes:
    * Remove the use of get() which looks into environment variables (prone to crashes if a variable of the same name exists) and directly references the functions that should be used instead. 
    * Fixed the error when a .fa file is provided as a string variable in non-windows system
    * Fixed the error when no single exon read class is provided in any samples
    * Fixed the bug when no splice overlap is found between read classes and annotations

bambu v1.0.2 (Change date: 2020-11-10)
==============

Changes:
    * Bug fix for author name display
    * Bug fix for calling fasta file and bam file from ExperimentHub
    * Update NEWS file 

bambu v1.0.1 (Change date: 2020-11-06)
==============

Changes:
    * Bug fix for parallel computation to avoid bplapply

bambu v0.99.4 (Release date: 2020-08-18)
==============

Changes:
    * Remove codes using seqlevelStyle to allow customized annotation
    * update the requirement of R version and ExperimentHub version



bambu v0.99.1 (Release date: 2020-08-18)
==============

    * First submission to BioConductor