Package: biscuiteer
Type: Package
Title: Convenience Functions for Biscuit
Description: A test harness for bsseq loading of Biscuit output, summarization
             of WGBS data over defined regions and in mappable samples, with or
             without imputation, dropping of mostly-NA rows, age estimates, etc.
Version: 1.7.2
Date: 2021-06-30
Author: Tim Triche, Jr. [aut, cre], Wanding Zhou [aut], Ben Johnson [aut], Jacob Morrison [aut], Lyong Heo [aut]
Maintainer: "Jacob Morrison" <jacob.morrison@vai.org>
URL: https://github.com/trichelab/biscuiteer
BugReports: https://github.com/trichelab/biscuiteer/issues
License: GPL-3
Depends: R (>= 3.6), biscuiteerData, bsseq
Imports: readr, qualV, Matrix, impute, HDF5Array, S4Vectors, Rsamtools,
        data.table, Biobase, GenomicRanges, BiocGenerics,
        VariantAnnotation, DelayedMatrixStats, SummarizedExperiment,
        GenomeInfoDb, Mus.musculus, Homo.sapiens, matrixStats,
        rtracklayer, QDNAseq, dmrseq, methods, utils, R.utils, gtools,
        BiocParallel
Suggests: DSS, covr, knitr, rmarkdown, markdown, rlang, scmeth,
        pkgdown, roxygen2, testthat, QDNAseq.hg19, QDNAseq.mm10
biocViews: DataImport, MethylSeq, DNAMethylation
Encoding: UTF-8
RoxygenNote: 7.1.1
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/biscuiteer
git_branch: master
git_last_commit: 979bd5b
git_last_commit_date: 2021-06-30
Date/Publication: 2021-07-01
NeedsCompilation: no
Packaged: 2021-07-01 22:33:40 UTC; biocbuild
Built: R 4.1.0; ; 2021-07-02 12:19:53 UTC; unix
