Package: TFEA.ChIP
Type: Package
Title: Analyze Transcription Factor Enrichment
Version: 1.14.0
Author: Laura Puente Santamaría, Luis del Peso
Maintainer: Laura Puente Santamaría <lpsantamaria@iib.uam.es>
Description: Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.
Depends: R (>= 3.3)
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
RoxygenNote: 6.1.1
Imports: GenomicRanges, IRanges, biomaRt, GenomicFeatures, grDevices,
        dplyr, stats, utils, R.utils, methods, org.Hs.eg.db
Suggests: knitr, rmarkdown, S4Vectors, plotly, scales, tidyr, ggplot2,
        GSEABase, DESeq2, BiocGenerics, ggrepel, rcompanion,
        TxDb.Hsapiens.UCSC.hg19.knownGene
VignetteBuilder: knitr
biocViews: Transcription, GeneRegulation, GeneSetEnrichment,
        Transcriptomics, Sequencing, ChIPSeq, RNASeq, ImmunoOncology
NeedsCompilation: no
Packaged: 2021-10-27 03:50:05 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/TFEA.ChIP
git_branch: RELEASE_3_14
git_last_commit: 42c4ce4
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
Built: R 4.1.1; ; 2021-10-27 17:21:00 UTC; unix
