AffyProbesMatch-class	AffyProbesMatch-class
appendCdfEnvAffy	appendCdfEnvAffy
buildCdfEnv.biostrings	buildCdfEnv.biostrings
buildCdfEnv.matchprobes	cdfenv
CdfEnv	cdfenv
CdfEnvAffy-class	CdfEnvAffy-class
cdfenvEx	cdfenvEx
coerce,CdfEnvAffy,Cdf-method	CdfEnvAffy-class
coerce,CdfEnvAffy,environment-method	CdfEnvAffy-class
combine,AffyProbesMatch,AffyProbesMatch-method	AffyProbesMatch-class
copyCdfEnvAffy	copyCdfEnvAffy
countduplicated	countduplicated
countskip.FASTA.entries	utils.FASTA
geneNames,CdfEnvAffy-method	CdfEnvAffy-class
geneNames.CdfEnvAffy	geneNames
getCdfEnvAffy	cdfenv
getxy.probeseq	getxy.probeseq
grep.FASTA.entry	utils.FASTA
index2xy	index2xy
index2xy,CdfEnvAffy-method	CdfEnvAffy-class
index2xy.CdfEnvAffy	index2xy
indexProbes,CdfEnvAffy,character-method	CdfEnvAffy-class
indexProbes.CdfEnvAffy	indexProbes.CdfEnvAffy
matchAffyProbes	matchAffyProbes
mmProbes	matchAffyProbes
plot,CdfEnvAffy,missing-method	CdfEnvAffy-class
plot.CdfEnvAffy	plot.CdfEnvAffy
print.FASTA	utils.FASTA
printValidCdfEnvAffy	validAffyBatch
read.FASTA.entry	utils.FASTA
read.n.FASTA.entries	utils.FASTA
read.n.FASTA.entries.split	utils.FASTA
read.n.FASTA.headers	utils.FASTA
read.n.FASTA.sequences	utils.FASTA
removeIndex	removeIndex
show,AffyProbesMatch-method	AffyProbesMatch-class
show,CdfEnvAffy-method	CdfEnvAffy-class
skip.FASTA.entry	utils.FASTA
toHypergraph	toHypergraph
toHypergraph,AffyProbesMatch-method	AffyProbesMatch-class
toHypergraph,CdfEnvAffy-method	CdfEnvAffy-class
unique.CdfEnvAffy	unique.CdfEnvAffy
validAffyBatch	validAffyBatch
validCdfEnvAffy	validAffyBatch
wrapCdfEnvAffy	cdfenv
write.FASTA	utils.FASTA
xy2index	index2xy
xy2index,CdfEnvAffy-method	CdfEnvAffy-class
xy2index.CdfEnvAffy	index2xy
[,CdfEnvAffy,character,missing,missing-method	CdfEnvAffy-class
