Linear model and normality based normalization and transformation method (Linnorm)

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Documentation for package ‘Linnorm’ version 2.30.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

Islam2011	scRNA-seq data from Islam et al. 2011
LIHC	Partial RNA-seq data from TCGA LIHC (Liver Hepatocellular Carcinoma)
LinearRegression	One Pass Linear Regression.
LinearRegressionFP	One Pass Linear Regression with fixed point.
Linnorm	Linnorm Normalizing Transformation Function
Linnorm.Cor	Linnorm-gene correlation network analysis.
Linnorm.DataImput	Linnorm Data Imputation Function. (In development)
Linnorm.HClust	Linnorm-hierarchical clustering analysis.
Linnorm.HVar	Linnorm-Hvar pipeline for highly variable gene discovery.
Linnorm.limma	Linnorm-limma pipeline for Differentially Expression Analysis
Linnorm.Norm	Linnorm Normalization Function
Linnorm.PCA	Linnorm-PCA Clustering pipeline for subpopulation Analysis
Linnorm.SGenes	Linnorm model stable gene selection tool.
Linnorm.tSNE	Linnorm t-SNE Clustering pipeline for subpopulation Analysis
RnaXSim	This function simulates an RNA-seq dataset based on a given distribution.
SEQC	Partial RNA-seq data from SEQC/MAQC-III Sample A