%>%	pipe
apl	apl
apl_coords	apl_coords
apl_ggplot	apl_ggplot
apl_plotly	apl_plotly
apl_score	apl_score
apl_topGO	apl_topGO
as.cacomp	as.cacomp
as.cacomp,cacomp-method	as.cacomp
as.cacomp,list-method	as.cacomp
as.cacomp,Seurat-method	as.cacomp
as.cacomp,SingleCellExperiment-method	as.cacomp
as.list,cacomp-method	as.list-cacomp-method
cacomp	cacomp
cacomp,dgCMatrix-method	cacomp
cacomp,matrix-method	cacomp
cacomp,Seurat-method	cacomp
cacomp,SingleCellExperiment-method	cacomp
cacomp-class	cacomp-class
cacomp_names	cacomp_names
cacomp_slot	cacomp_slot
calc_residuals	calc_residuals
ca_3Dplot	ca_3Dplot
ca_3Dplot,cacomp-method	ca_3Dplot
ca_3Dplot,Seurat-method	ca_3Dplot
ca_3Dplot,SingleCellExperiment-method	ca_3Dplot
ca_biplot	ca_biplot
ca_biplot,cacomp-method	ca_biplot
ca_biplot,Seurat-method	ca_biplot
ca_biplot,SingleCellExperiment-method	ca_biplot
ca_coords	ca_coords
check_cacomp	check_cacomp
clip_residuals	clip_residuals
comp_ft_residuals	comp_ft_residuals
comp_NB_residuals	comp_NB_residuals
comp_std_residuals	comp_std_residuals
elbow_method	elbow_method
inertia_rows	inertia_rows
is.empty	is.empty
new_cacomp	cacomp-class
permutation_cutoff	permutation_cutoff
pick_dims	pick_dims
pick_dims,cacomp-method	pick_dims
pick_dims,Seurat-method	pick_dims
pick_dims,SingleCellExperiment-method	pick_dims
plot_enrichment	plot_enrichment
random_direction_cutoff	random_direction_cutoff
recompute	recompute
rm_zeros	rm_zeros
runAPL	runAPL
runAPL,dgCMatrix-method	runAPL
runAPL,matrix-method	runAPL
runAPL,Seurat-method	runAPL
runAPL,SingleCellExperiment-method	runAPL
run_APL	runAPL
run_cacomp	run_cacomp
scree_plot	scree_plot
show,cacomp-method	show.cacomp
show.cacomp	show.cacomp
subset_dims	subset_dims
var_rows	var_rows
