Package: SPIA
Version: 2.58.0
Date: 2013-2-20
Title: Signaling Pathway Impact Analysis (SPIA) using combined evidence
        of pathway over-representation and unusual signaling
        perturbations
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>, Purvesh Kathri
        <purvesh@cs.wayne.edu> and Sorin Draghici <sorin@wayne.edu>
Depends: R (>= 2.14.0), graphics, KEGGgraph
Suggests: graph, Rgraphviz, hgu133plus2.db
Maintainer: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Description: This package implements the Signaling Pathway Impact
        Analysis (SPIA) which uses the information form a list of
        differentially expressed genes and their log fold changes
        together with signaling pathways topology, in order to identify
        the pathways most relevant to the condition under the study.
License: file LICENSE
License_restricts_use: yes
URL: http://bioinformatics.oxfordjournals.org/cgi/reprint/btn577v1
Collate: spia.R plotP.R combfunc.R getP2.R makeSPIAdata.R
Imports: graphics
LazyLoad: yes
Packaged: 2024-10-30 01:55:35 UTC; biocbuild
biocViews: Microarray, GraphAndNetwork
git_url: https://git.bioconductor.org/packages/SPIA
git_branch: RELEASE_3_20
git_last_commit: 6d8dc02
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Built: R 4.4.1; ; 2024-10-30 11:39:17 UTC; unix
