# Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences

## Documentation for package ‘scifer’ version 1.8.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

df_to_fasta | Fasta file creation from dataframe columns and/or vectors.
fcs_plot | Plot flow data from index sorted cells
fcs_processing | Extract index sorting information from flow cytometry data
igblast | Run IgDiscover for IgBlast using basilisk, which enables the python environment for Igblast
quality_report | Generate general and individualized reports
scifer | Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences
secondary_peaks | Check for secondary peaks in a sangerseq object
summarise_abi_file | Create a summary of a single ABI sequencing file
summarise_quality | Generate a summary table containing quality measurements from sanger sequencing abi files