Package: PureCN
Type: Package
Title: Estimating tumor purity, ploidy, LOH, and SNV status using
        hybrid capture NGS data
Version: 1.0.4
Date: 2016-06-05
Author: Markus Riester
Maintainer: Markus Riester <markus.riester@novartis.com>
Description: This package estimates tumor purity, copy number, loss of
    heterozygosity (LOH), and status of single nucleotide variants (SNVs). 
    PureCN is designed for hybrid capture sequencing data, integrates 
    well with standard somatic variant detection pipelines, 
    and has support for tumor samples without matching normal samples.
Depends: R (>= 3.3), DNAcopy, VariantAnnotation (>= 1.14.1)
Imports: GenomicRanges (>= 1.20.3), IRanges (>= 2.2.1), RColorBrewer,
        S4Vectors, data.table, grDevices, graphics, stats, utils,
        SummarizedExperiment, GenomeInfoDb
Suggests: PSCBS, RUnit, BiocStyle, BiocGenerics, knitr
VignetteBuilder: knitr
License: Artistic-2.0
biocViews: CopyNumberVariation, Software, Sequencing,
        VariantAnnotation, VariantDetection
NeedsCompilation: no
Packaged: 2016-07-08 05:36:47 UTC; biocbuild
Built: R 3.3.1; ; 2016-07-08 14:12:23 UTC; unix
